Table S3

URL: https://ckan.earlham.ac.uk/dataset/ba38deb9-df57-4771-85c4-0a1e18a1106d/resource/48bee271-b275-4810-bdcf-7f5ade36675e/download/1-s2.0-s193131281930366x-mmc4.xlsx

Table S3. S. Typhi Genes Counter-selected in hu-SRC-SCID Mice 24 hpi, Related to STAR Methods. Data was analyzed using Bio::TraDIS pipeline script tradis_comparison.R (Barquist et al., 2016) with input S. Typhi transposon libraries (T2 and JZ01) and output transposon libraries from hu-SRC-SCID mice 24 hrs p.i. (T3, T4, T5, T6, T13, T14, T15, T16, and T17). Genes found counter-selected in hu-SRC-SCID mice with a false discovery rate (Q value) of <0.05 and log fold change (logFC) of <-2 were deemed significant

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Data last updated November 5, 2019
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