Table S3

Table S3. S. Typhi Genes Counter-selected in hu-SRC-SCID Mice 24 hpi, Related to STAR Methods. Data was analyzed using Bio::TraDIS pipeline script tradis_comparison.R (Barquist et al., 2016) with input S. Typhi transposon libraries (T2 and JZ01) and output transposon libraries from hu-SRC-SCID mice 24 hrs p.i. (T3, T4, T5, T6, T13, T14, T15, T16, and T17). Genes found counter-selected in hu-SRC-SCID mice with a false discovery rate (Q value) of <0.05 and log fold change (logFC) of <-2 were deemed significant