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Data management and best practice for plant science
Plant research produces data in a profusion of types and scales, and in ever-increasing volume. What are the challenges and opportunities presented by data management in... -
Heterarchy of transcription factors driving basal and luminal cell phenotypes...
Heterarchy of transcription factors driving basal and luminal cell phenotypes in human urothelium -
Speed breeding is a powerful tool to accelerate crop research and breeding
The growing human population and a changing environment have raised significant concern for global food security, with the current improvement rate of several important crops... -
SalmoNet, an integrated network of ten Salmonella enterica strains reveals co...
Salmonella enterica is a prominent bacterial pathogen with implications on human and animal health. Salmonella serovars could be classified as gastro-intestinal or... -
Genomics of habitat choice and adaptive evolution in a deep-sea fish
Intraspecific diversity promotes evolutionary change, and when partitioned among geographic regions or habitats can form the basis for speciation. Marine species live in an... -
New approaches for assembly of short-read metagenomic data
In recent years, the use of longer-range read data combined with advances in assembly algorithms has stimulated big improvements in the contiguity and quality of genome... -
Building a locally diploid genome and transcriptome of the diatom Fragilariop...
Building a locally diploid genome and transcriptome of the diatom Fragilariopsis cylindrus -
Sixteen diverse laboratory mouse reference genomes define strain-specific hap...
We report full-length draft de novo genome assemblies for 16 widely used inbred mouse strains and find extensive strain-specific haplotype variation. We identify and... -
The ash dieback invasion of Europe was founded by two genetically divergent i...
Accelerating international trade and climate change make pathogen spread an increasing concern. Hymenoscyphus fraxineus, the causal agent of ash dieback, is a fungal pathogen... -
Interplay of cis and trans mechanisms driving transcription factor binding an...
Noncoding regulatory variants play a central role in the genetics of human diseases and in evolution. Here we measure allele-specific transcription factor binding occupancy of... -
Primula vulgaris (primrose) genome assembly, annotation and gene expression, ...
Primula vulgaris (primrose) exhibits heterostyly: plants produce self-incompatible pin- or thrum-form flowers, with anthers and stigma at reciprocal heights. Darwin concluded... -
Harnessing genetic potential of wheat germplasm banks through impact-oriented...
The value of exotic wheat genetic resources for accelerating grain yield gains is largely unproven and unrealized. We used next-generation sequencing, together with...
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