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SalmoNet, an integrated network of ten Salmonella enterica strains reveals co...
Salmonella enterica is a prominent bacterial pathogen with implications on human and animal health. Salmonella serovars could be classified as gastro-intestinal or... -
Probing Genomic Aspects of the Multi-Host Pathogen Clostridium perfringens Re...
Clostridium perfringens is an important cause of animal and human infections, however information about the genetic makeup of this pathogenic bacterium is currently limited. In... -
Pathogenomic Analysis of Wheat Yellow Rust Lineages Detects Seasonal Variatio...
Recent disease outbreaks caused by (re-)emerging plant pathogens have been associated with expansions in pathogen geographic distribution and increased virulence. For example,... -
Systems-Level Feedbacks of NRF2 Controlling Autophagy upon Oxidative Stress R...
Although the primary role of autophagy-dependent cellular self-eating is cytoprotective upon various stress events (such as starvation, oxidative stress, and high temperatures),... -
A critical comparison of technologies for a plant genome sequencing project
A high-quality genome sequence of any model organism is an essential starting point for genetic and other studies. Older clone-based methods are slow and expensive, whereas... -
Building a locally diploid genome and transcriptome of the diatom Fragilariop...
Building a locally diploid genome and transcriptome of the diatom Fragilariopsis cylindrus -
Elucidating the genetic basis of biomass accumulation and radiation use effic...
One of the major challenges for plant scientists is increasing wheat (Triticum aestivum) yield potential (YP). A significant bottleneck for increasing YP is achieving increased... -
Genome variation and conserved regulation identify genomic regions responsibl...
The genomes of laboratory rat strains are characterised by a mosaic haplotype structure caused by their unique breeding history. These mosaic haplotypes have been recently... -
GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl...
Gene duplication is a major factor contributing to evolutionary novelty, and the contraction or expansion of gene families has often been associated with morphological,... -
Interplay of cis and trans mechanisms driving transcription factor binding an...
Noncoding regulatory variants play a central role in the genetics of human diseases and in evolution. Here we measure allele-specific transcription factor binding occupancy of... -
A transatlantic perspective on 20 emerging issues in biological engineering
Advances in biological engineering are likely to have substantial impacts on global society. To explore these potential impacts we ran a horizon scanning exercise to capture a... -
The Galaxy platform for accessible, reproducible and collaborative biomedical...
Galaxy (homepage: https://galaxyproject.org, main public server: https://usegalaxy.org) is a web-based scientific analysis platform used by tens of thousands of scientists... -
What We Learned From Big Data for Autophagy Research
Autophagy is the process by which cytoplasmic components are sequestered in autophagosomal vesicles and delivered to the lysosome for degradation. Defective autophagy has been... -
Primula vulgaris (primrose) genome assembly, annotation and gene expression, ...
Primula vulgaris (primrose) exhibits heterostyly: plants produce self-incompatible pin- or thrum-form flowers, with anthers and stigma at reciprocal heights. Darwin concluded... -
Harnessing genetic potential of wheat germplasm banks through impact-oriented...
The value of exotic wheat genetic resources for accelerating grain yield gains is largely unproven and unrealized. We used next-generation sequencing, together with... -
Identification of candidate protective variants for common diseases and evalu...
Human polymorphisms with derived alleles that are protective against disease may provide powerful translational opportunities. Here we report a method to identify such candidate... -
Comparative genomic analysis of the ‘pseudofungus’ Hyphochytrium catenoides
Eukaryotic microbes have three primary mechanisms for obtaining nutrients and energy: phagotrophy, photosynthesis and osmotrophy. Traits associated with the latter two functions...